Question:
The bioinformatics tool used to identify microsatellites (repeated motifs) in a genome is
The bioinformatics tool used to identify microsatellites (repeated motifs) in a genome is
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MISA:
- Tool for microsatellite (SSR) identification.
- SSRs are repeated DNA motifs (e.g., (GT)n).
- Used in genetic mapping and marker development.
- Tool for microsatellite (SSR) identification.
- SSRs are repeated DNA motifs (e.g., (GT)n).
- Used in genetic mapping and marker development.
Updated On: Sep 1, 2026
- Primer 3 plus
- MISA
- Codon-code-aligner
- SNP digger
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The Correct Option is B
Solution and Explanation
Step 1: Understanding the Question:
This question tests knowledge of bioinformatics tools for genomic analysis.
Step 2: Detailed Explanation:
MISA (MicroSatellite identification tool) is used to identify microsatellites (SSRs) in a genome.
It detects simple sequence repeats in DNA sequences.
Primer 3 plus (A): Used for primer design.
Codon-code-aligner (C): Not a standard tool.
SNP digger (D): Used for SNP identification.
Thus, MISA is used for microsatellite identification.
Step 3: Final Answer:
Thus, MISA is used to identify microsatellites, which corresponds to option (B).
[0.5cm]
This question tests knowledge of bioinformatics tools for genomic analysis.
Step 2: Detailed Explanation:
MISA (MicroSatellite identification tool) is used to identify microsatellites (SSRs) in a genome.
It detects simple sequence repeats in DNA sequences.
Primer 3 plus (A): Used for primer design.
Codon-code-aligner (C): Not a standard tool.
SNP digger (D): Used for SNP identification.
Thus, MISA is used for microsatellite identification.
Step 3: Final Answer:
Thus, MISA is used to identify microsatellites, which corresponds to option (B).
[0.5cm]
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